| Organisms | Version | Scaffolds | Total length | Genome | Annotation |
|---|---|---|---|---|---|
| Homo_sapiens | GRCh38-2020-A | 920 | 3,272,116,950 | Homo_sapiens.GRCh38.dna.primary_assembly.fa | Homo_sapiens.v32.annotation.gtf |
| Mus_musculus | mm10-2020-A | 102 | 2,728,222,451 | Mus_musculus.GRCm38.dna.primary_assembly.fa | Mus_musculus.vM23.annotation.gtf |
| Arabidopsis thaliana | TAIR10 | 7 | 119,668,634 | Arabidopsis_thaliana.TAIR10.dna.toplevel.fa | Arabidopsis_thaliana.TAIR10.49.gtf |
| Oryza sativa Indica Group | ASM465v1 | 10,627 | 426,337,286 | Oryza_indica.ASM465v1.dna.toplevel.fa | Oryza_indica.ASM465v1.50.gtf |
| Oryza sativa Japonica Group | IRGSP-1.0 | 55 | 373,795,655 | Oryza_sativa.IRGSP-1.0.dna.toplevel.fa | Oryza_sativa.IRGSP-1.0.50.gtf |
| Chlamydomonas reinhardtii | Chlamydomonas_reinhardtii_v5.5 | 53 | 111,098,438 | Chlamydomonas_reinhardtii_v5.5.dna.toplevel.fa | Chlamydomonas_reinhardtii_v5.5.50.gtf |
| Zea mays | B73_RefGen_v4 | 596 | 2,134,373,047 | Zea_mays.B73_RefGen_v4.dna.toplevel.fa | Zea_mays.B73_RefGen_v4.50.gtf |
Note: For some data, the available BAM files were not generated with the genome assembly list above, we used the matched GTF file to the genome assembly corresponding to the BAM file when running Sierra. These additional GTF files are listed in the following table.
| Organisms | Version | Annotation |
|---|---|---|
| Homo_sapiens | GRCh37 | Homo_sapiens.GRCh37.87.gtf |
| Homo_sapiens | GRCh38.102 | Homo_sapiens.GRCh38.102.gtf |
| Homo_sapiens | hg38 | hg38.knownGene.gtf |
| Mus_musculus | mm10.knowgene | mm10.knownGene.gtf |
| Mus_musculus | GRCm38.102 | Mus_musculus.GRCm38.102.gtf |
| Organisms | Source | Reference | Download |
|---|---|---|---|
| Homo_sapiens | PolyA Site 2.0 | Herrmann et al. Nucleic Acids Research 2020 | Download |
| Mus_musculus | PolyA Site 2.0 | Herrmann et al. Nucleic Acids Research 2020 | Download |
| Arabidopsis thaliana | PlantAPAdb | Zhu et al. Plant Physiology 2020 | Download |
| Oryza sativa Japonica Group | PlantAPAdb | Zhu et al. Plant Physiology 2020 | Download |
| Chlamydomonas reinhardtii | PlantAPAdb | Zhu et al. Plant Physiology 2020 | Download |
| Zea mays | Jafar et al. 2019 | Jafar et al. G3: Genes|Genomes|Genetics 2019 | Download |
