Experiment	GSM3637737	Study	GSE127724 
Organism	Mus musculus (mm10)	Tissue	Visual cortex
Protocol	10X	Sample#	1
Sample Run	SRR8689256
Reference	Wester, J. C., et al. (2019). Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner. Neuron 102(5): 960-975.e966.

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Gene#	17723	Cell#	5912
PolyA site#	scAPAtrap 17394Sierra 13217	Gene with polyA site#	scAPAtrap 13573Sierra 9964
APA event#	scAPAtrap 6572Sierra 5517	Gene with APA event#	scAPAtrap 2751Sierra 2270
Cell types 4	Retinal ganglion cell: 4717Rheaume et al.Nat Commun.38: 1023Rheaume et al.Nat Commun.28: 112Rheaume et al.Nat Commun.18: 60

APA index

PolyA Site Expression APA Usage Weighted 3' UTR Length

Tools

scAPAtrap Sierra

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Box plot showing in different cell types

UMAP showing 2D embeddings of cell types based on the gene expression profile

UMAP showing distribution in single cells

Scatter plot showing correlation between gene expression and