Experiment	GSM3018694	Study	GSE110909 
Organism	Mus musculus (mm10)	Tissue	Yolk sack
Protocol	10X	Sample#	1
Sample Run	SRR6756979
Reference	Ganuza, M., et al. (2018). Murine hematopoietic stem cell activity is derived from pre-circulation embryos but not yolk sacs. Nature Communications 9(1): 5405.

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Gene#	11450	Cell#	3504
PolyA site#	scAPAtrap 13499Sierra 10032	Gene with polyA site#	scAPAtrap 11101Sierra 8249
APA event#	scAPAtrap 4325Sierra 3210	Gene with APA event#	scAPAtrap 1927Sierra 1427
Cell types 4	Oogonial stem cell: 1312Granulosa cell: 1386Oocyte: 598Ovarian surface epithelial cell: 208

APA index

PolyA Site Expression APA Usage Weighted 3' UTR Length

Tools

scAPAtrap Sierra

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Box plot showing in different cell types

UMAP showing 2D embeddings of cell types based on the gene expression profile

UMAP showing distribution in single cells

Scatter plot showing correlation between gene expression and