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GSM3509839



  Basic Information
Experiment GSM3509839 Study GSE114530
Organism Homo sapiens (GRCh38) Tissue Embryonic kidney
Protocol 10X Sample# 8
Sample Run SRR8313167 SRR8313168 SRR8313169 SRR8313170 SRR8313171 SRR8313172 SRR8313173 SRR8313174
Reference Hochane, M., et al. (2019). Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. PLoS Biol 17(2): e3000152.

Gene# 20075 Cell# 1725
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 21

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
1.522.533.5NPCcPodErPrTPTARVCSBbSSBm/dICaNPCdRVCSBaSSBpodSSBprEndIPCDTLHNPCaICbUBCDLeuNPCbCnTMes
NPCcPodErPrTPTARVCSBbSSBm/dICaNPCdRVCSBaSSBpodSSBprEndIPCDTLHNPCaICbUBCDLeuNPCbCnTMesPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−10−50510−4−2024
NPCcPodErPrTPTARVCSBbSSBm/dICaNPCdRVCSBaSSBpodSSBprEndIPCDTLHNPCaICbUBCDLeuNPCbCnTMesUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−50510−4−2024
1.522.533.5Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
1.522.533.544.51.522.533.5
Gene expressionPoly(A) site expression