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GSM3449587

  Basic Information
Experiment GSM3449587 Study GSE121891
Organism Mus musculus (mm10) Tissue Olfactory bulb
Protocol 10X Sample# 4
Sample Run SRR8126374 SRR8126375 SRR8126376 SRR8126377
Reference Tepe, B., et al. (2018). Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons. Cell Reports 25(10): 2689-2703.e2683.
Gene# 24736 Cell# 4952
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 13

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing poly(A) site expression in different cell types
0204060NeuroblastsPurkinje neuronsSchwann cellsAstrocytesEndothelial cellsUnknownMicrogliaPericytesMeningeal cellsOligodendrocytesOligodendrocyte progenitor cellsInterneuronsNeurons
NeuroblastsPurkinje neuronsSchwann cellsAstrocytesEndothelial cellsUnknownMicrogliaPericytesMeningeal cellsOligodendrocytesOligodendrocyte progenitor cellsInterneuronsNeuronsPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−15−10−5051015−20−15−10−5051015
NeuroblastsPurkinje neuronsSchwann cellsAstrocytesEndothelial cellsUnknownMicrogliaPericytesMeningeal cellsOligodendrocytesOligodendrocyte progenitor cellsInterneuronsNeuronsUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−15−10−5051015−20−15−10−5051015
102030405060Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
051015202530010203040506070
Gene expressionPoly(A) site expression

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