Study	GSE128854
Organism	Mus musculus (mm10)
Tissue	Dura mater, choroid plexus, subdural meninges, whole brain
Protocol	10X
Reference	Van Hove, H., et al. (2019). A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. Nature Neuroscience 22(6): 1021-1035.
Experiments 15	GSM3687213GSM3687214GSM3687215GSM3687216GSM3687217GSM3687218GSM3687219GSM3687220GSM3687221GSM3687222GSM3687223GSM3687224GSM3687225GSM3687226GSM3687227

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Gene#	19323	Cell#	41707
PolyA site#	scAPAtrap 25956	Gene with polyA site#	scAPAtrap 22497
APA event#	scAPAtrap 9692	Gene with APA event#	scAPAtrap 6936
Cell types 7	Hematopoetic cell: 16654Transit amplifying (TA) cell: 19845CXCR6+ T cell: 337Extraembryonic ectoderm cell: 769CD8+ T cell: 1896Microglial cell: 2194Erythroid cell: 12

APA index

PolyA Site Expression APA Usage Weighted 3' UTR Length

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Box plot showing the of this gene in different cell types

UMAP showing 2D embeddings of cell types based on the gene expression profile

UMAP showing 2D embeddings of batches based on the gene expression profile

UMAP showing distribution in single cells

Scatter plot showing correlation between gene expression and