HOME/ EXPERIMENT/

GSM2883186



  Basic Information
Experiment GSM2883186 Study GSE107910
Organism Mus musculus (mm10) Tissue Thymus
Protocol Drop-seq Sample# 1
Sample Run SRR6365735
Reference Kernfeld, E. M., et al. (2018). A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. Immunity 48(6): 1258-1270.e1256.

Gene# 14073 Cell# 829
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Box plot showing poly(A) site expression in different cell types
1.522.53Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cell
Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cellPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−50510−20−10010
Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−50510−20−10010
1.522.53Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
1.522.533.541.522.533.5
Gene expressionPoly(A) site expression