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GSM3687224



  Basic Information
Experiment GSM3687224 Study GSE128854
Organism Mus musculus (mm10) Tissue Dura mater
Protocol 10X Sample# 6
Sample Run SRR8795665 SRR8795666 SRR8795667 SRR8795668 SRR8795669 SRR8795670
Reference Van Hove, H., et al. (2019). A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. Nature Neuroscience 22(6): 1021-1035.

Gene# 14927 Cell# 5791
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
246Hematopoetic cellTransit amplifying (TA) cell
Hematopoetic cellTransit amplifying (TA) cellPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−5051015−5051015
Hematopoetic cellTransit amplifying (TA) cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−5051015−5051015
234567Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression