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GSM2333592

  Basic Information
Experiment GSM2333592 Study GSE87544
Organism Mus musculus (mm10) Tissue Hypothalamus
Protocol Drop-seq Sample# 1
Sample Run SRR4340041
Reference Chen, R., et al. (2017). Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. Cell Reports 18(13): 3227-3241.
Gene# 15380 Cell# 1091
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
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Box plot showing poly(A) site expression in different cell types
11.522.533.5PericyteNeuronEndothelial cellOligodendrocyteQuiescent neural stem cellVascular cellNeural stem cellMicroglial cell
PericyteNeuronEndothelial cellOligodendrocyteQuiescent neural stem cellVascular cellNeural stem cellMicroglial cellPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−10−50510−15−10−5051015
PericyteNeuronEndothelial cellOligodendrocyteQuiescent neural stem cellVascular cellNeural stem cellMicroglial cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−50510−15−10−5051015
1.522.53Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
1.522.533.511.522.533.5
Gene expressionPoly(A) site expression

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