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GSM4626008

  Basic Information
Experiment GSM4626008 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 4
Sample Run SRR12046115 SRR12046116 SRR12046117 SRR12046118
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.
Gene# 23086 Cell# 8975
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
Download
Box plot showing poly(A) site expression in different cell types
246810CortexColumellaAtrichoblastPhloemTrichoblastQuiescent CenterLateral Root CapPericycleXylemProcambiumEndodermis
CortexColumellaAtrichoblastPhloemTrichoblastQuiescent CenterLateral Root CapPericycleXylemProcambiumEndodermisPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−10−505−10−50510
CortexColumellaAtrichoblastPhloemTrichoblastQuiescent CenterLateral Root CapPericycleXylemProcambiumEndodermisUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−505−10−50510
246810Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression

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