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GSE114615



Basic Information
Study GSE114615
Organism Arabidopsis thaliana (TAIR10)
Tissue Whole root
Protocol Drop-seq
Reference Turco, G. M., et al. (2019). Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports 28(2): 342-351.e344.
Experiments 6 GSM3145906GSM3145907GSM3145908GSM3145909GSM3145910GSM3145911

Gene# 24214 Cell# 3475
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

 APA information of the complied study
PolyA Site Expression
APA Usage
Weighted 3' UTR Length

Box plot showing the poly(A) site expression of this gene in different cell types
0510152025TrichoblastAtrichoblastPhloemCortexXylemColumellaQuiescent CenterEndodermisLateral Root CapProcambiumPericycle
TrichoblastAtrichoblastPhloemCortexXylemColumellaQuiescent CenterEndodermisLateral Root CapProcambiumPericyclePoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−505−10−505
TrichoblastAtrichoblastPhloemCortexXylemColumellaQuiescent CenterEndodermisLateral Root CapProcambiumPericycleUMAP_1UMAP_2
UMAP showing 2D embeddings of batches based on the gene expression profile
−505−10−505
GSM3145906GSM3145907GSM3145908GSM3145909GSM3145910GSM3145911UMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−505−10−505
05101520Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
051015200510152025
Gene expressionPoly(A) site expression