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GSM2883196



  Basic Information
Experiment GSM2883196 Study GSE107910
Organism Mus musculus (mm10) Tissue Thymus
Protocol Drop-seq Sample# 1
Sample Run SRR6365745
Reference Kernfeld, E. M., et al. (2018). A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. Immunity 48(6): 1258-1270.e1256.

Gene# 12914 Cell# 836
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Box plot showing poly(A) site expression in different cell types
1.522.53ThymocytesThymus-derived regulatory T (Treg) cellNaive thymic NKT17 cell
ThymocytesThymus-derived regulatory T (Treg) cellNaive thymic NKT17 cellPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−10−505−6−4−20246
ThymocytesThymus-derived regulatory T (Treg) cellNaive thymic NKT17 cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−505−6−4−20246
1.522.53Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
1.522.533.541.522.53
Gene expressionPoly(A) site expression