Experiment	GSM3637738	Study	GSE127724 
Organism	Mus musculus (mm10)	Tissue	Visual cortex
Protocol	10X	Sample#	1
Sample Run	SRR8689257
Reference	Wester, J. C., et al. (2019). Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner. Neuron 102(5): 960-975.e966.

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Gene#	18435	Cell#	5947
PolyA site#	scAPAtrap 18358Sierra 14347	Gene with polyA site#	scAPAtrap 13627Sierra 10132
APA event#	scAPAtrap 7932Sierra 6901	Gene with APA event#	scAPAtrap 3201Sierra 2689
Cell types 3	Rheaume et al.Nat Commun.38: 4541Retinal ganglion cell: 1371Rheaume et al.Nat Commun.18: 35

APA index

PolyA Site Expression APA Usage Weighted 3' UTR Length

Tools

scAPAtrap Sierra

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Box plot showing in different cell types

UMAP showing 2D embeddings of cell types based on the gene expression profile

UMAP showing distribution in single cells

Scatter plot showing correlation between gene expression and