HOME/ EXPERIMENT/

GSM3687213



  Basic Information
Experiment GSM3687213 Study GSE128854
Organism Mus musculus (mm10) Tissue Dura mater
Protocol 10X Sample# 8
Sample Run SRR8795613 SRR8795614 SRR8795615 SRR8795616 SRR8795617 SRR8795618 SRR8795619 SRR8795620
Reference Van Hove, H., et al. (2019). A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. Nature Neuroscience 22(6): 1021-1035.

Gene# 17248 Cell# 9202
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
0510152025Transit amplifying (TA) cellHematopoetic cellCXCR6+ T cell
Transit amplifying (TA) cellHematopoetic cellCXCR6+ T cellPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−15−10−50510−15−10−5051015
Transit amplifying (TA) cellHematopoetic cellCXCR6+ T cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−15−10−50510−15−10−5051015
510152025Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
246810120510152025
Gene expressionPoly(A) site expression