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GSM4625998

  Basic Information
Experiment GSM4625998 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 2
Sample Run SRR12046061 SRR12046062
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.
Gene# 23555 Cell# 14064
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 9

  APA information  
PolyA Site Expression
APA Usage
Weighted 3' UTR Length
scAPAtrap
Sierra
Download
Box plot showing poly(A) site expression in different cell types
2468AtrichoblastCortexPhloemTrichoblastColumellaQuiescent CenterEndodermisXylemLateral Root Cap
AtrichoblastCortexPhloemTrichoblastColumellaQuiescent CenterEndodermisXylemLateral Root CapPoly(A) site expression
UMAP showing 2D embeddings of cell types based on the gene expression profile
−15−10−50510−15−10−50510
AtrichoblastCortexPhloemTrichoblastColumellaQuiescent CenterEndodermisXylemLateral Root CapUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−15−10−50510−15−10−50510
2468Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression

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