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GSM3687221

  Basic Information
Experiment GSM3687221 Study GSE128854
Organism Mus musculus (mm10) Tissue Dura mater
Protocol 10X Sample# 3
Sample Run SRR8795656 SRR8795657 SRR8795658
Reference Van Hove, H., et al. (2019). A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. Nature Neuroscience 22(6): 1021-1035.
Gene# 15895 Cell# 7169
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing weighted 3' UTR length in different cell types
10001500200025003000Transit amplifying (TA) cellHematopoetic cell
Transit amplifying (TA) cellHematopoetic cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−50510−15−10−5051015
Transit amplifying (TA) cellHematopoetic cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−50510−15−10−5051015
1000150020002500Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
0510152025303510001500200025003000
Gene expressionWeighted 3' UTR length

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