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GSM3687218

  Basic Information
Experiment GSM3687218 Study GSE128854
Organism Mus musculus (mm10) Tissue whole brain
Protocol 10X Sample# 2
Sample Run SRR8795649 SRR8795650
Reference Van Hove, H., et al. (2019). A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. Nature Neuroscience 22(6): 1021-1035.
Gene# 14996 Cell# 3351
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 4

  Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing weighted 3' UTR length in different cell types
10002000300040005000Microglial cellTransit amplifying (TA) cellHematopoetic cellCXCR6+ T cell
Microglial cellTransit amplifying (TA) cellHematopoetic cellCXCR6+ T cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−505101520−10−5051015
Microglial cellTransit amplifying (TA) cellHematopoetic cellCXCR6+ T cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−505101520−10−5051015
10002000300040005000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
24681010002000300040005000
Gene expressionWeighted 3' UTR length

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