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GSM3145907



  Basic Information
Experiment GSM3145907 Study GSE114615
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol Drop-seq Sample# 1
Sample Run SRR7181547
Reference Turco, G. M., et al. (2019). Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports 28(2): 342-351.e344.

Gene# 16930 Cell# 172
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  Weighted 3' UTR Length
scAPAtrap
Box plot showing weighted 3' UTR length in different cell types
40060080010001200TrichoblastPhloemCortexQuiescent CenterEndodermisAtrichoblastColumellaXylem
TrichoblastPhloemCortexQuiescent CenterEndodermisAtrichoblastColumellaXylemWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−6−4−20246−3−2−10123
TrichoblastPhloemCortexQuiescent CenterEndodermisAtrichoblastColumellaXylemUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−6−4−20246−3−2−10123
4006008001000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
2345678940060080010001200
Gene expressionWeighted 3' UTR length