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GSM3099846



  Basic Information
Experiment GSM3099846 Study GSE113196
Organism Homo sapiens (GRCh38) Tissue Breast epithelium
Protocol 10X Sample# 1
Sample Run SRR7010519
Reference Nguyen QH, Pervolarakis N, Blake K, Ma D et al.?Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity.?Nat Commun?2018 May 23;9(1):2028.?

Gene# 17363 Cell# 4116
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
1000150020002500Mammary epithelial cellsLuminal epithelial cells
Mammary epithelial cellsLuminal epithelial cellsWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−50510−10−5051015
Mammary epithelial cellsLuminal epithelial cellsUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−50510−10−5051015
1000150020002500Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
23456781000150020002500
Gene expressionWeighted 3' UTR length