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GSM3449591



  Basic Information
Experiment GSM3449591 Study GSE121891
Organism Mus musculus (mm10) Tissue Olfactory bulb
Protocol 10X Sample# 4
Sample Run SRR8126390 SRR8126391 SRR8126392 SRR8126393
Reference Tepe, B., et al. (2018). Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons. Cell Reports 25(10): 2689-2703.e2683.

Gene# 24786 Cell# 5864
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

  APA Usage
scAPAtrap
Sierra
Box plot showing APA usage in different cell types
0.40.50.60.7UnknownSchwann cellsInterneuronsMicrogliaAstrocytesOligodendrocytesPurkinje neuronsEndothelial cellsOligodendrocyte progenitor cellsT memory cellsPericytes
UnknownSchwann cellsInterneuronsMicrogliaAstrocytesOligodendrocytesPurkinje neuronsEndothelial cellsOligodendrocyte progenitor cellsT memory cellsPericytesAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−5051015−20−1001020
UnknownSchwann cellsInterneuronsMicrogliaAstrocytesOligodendrocytesPurkinje neuronsEndothelial cellsOligodendrocyte progenitor cellsT memory cellsPericytesUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
−10−5051015−20−1001020
0.40.50.6APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage