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GSM4809928



  Basic Information
Experiment GSM4809928 Study GSE158761
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 4
Sample Run SRR12743467 SRR12743468 SRR12743469 SRR12743470
Reference Gala, Hardik P., et al. A single cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana. bioRxiv?(2020).

Gene# 17421 Cell# 879
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 12

  PolyA Site Expression
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
246Ambiguous Stele CellsPhloem Pole PericycleEndodermisEpidermisColumella/ Root CapLateral Root EndodermisLateral Root PrimordiaXylem Pole PericycleXylemPhloemMature PericycleCortex
Ambiguous Stele CellsPhloem Pole PericycleEndodermisEpidermisColumella/ Root CapLateral Root EndodermisLateral Root PrimordiaXylem Pole PericycleXylemPhloemMature PericycleCortexPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−505−8−6−4−20246
Ambiguous Stele CellsPhloem Pole PericycleEndodermisEpidermisColumella/ Root CapLateral Root EndodermisLateral Root PrimordiaXylem Pole PericycleXylemPhloemMature PericycleCortexUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−505−8−6−4−20246
234567Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression