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GSM3145911



  Basic Information
Experiment GSM3145911 Study GSE114615
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol Drop-seq Sample# 1
Sample Run SRR7181551
Reference Turco, G. M., et al. (2019). Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports 28(2): 342-351.e344.

Gene# 19712 Cell# 1200
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 10

  PolyA Site Expression
scAPAtrap
Box plot showing poly(A) site expression in different cell types
1234567ColumellaQuiescent CenterAtrichoblastTrichoblastPhloemCortexXylemEndodermisPericycleLateral Root Cap
ColumellaQuiescent CenterAtrichoblastTrichoblastPhloemCortexXylemEndodermisPericycleLateral Root CapPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−505−8−6−4−20246
ColumellaQuiescent CenterAtrichoblastTrichoblastPhloemCortexXylemEndodermisPericycleLateral Root CapUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−505−8−6−4−20246
234567Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression