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GSM4905002



  Basic Information
Experiment GSM4905002 Study GSE161332
Organism Arabidopsis thaliana (TAIR10) Tissue Leaf protoplasts
Protocol 10X Sample# 8
Sample Run SRR13040579 SRR13040580 SRR13040581 SRR13040582 SRR13040583 SRR13040584 SRR13040585 SRR13040586
Reference Kim, Ji-Yun, et al. Distinct identities of leaf phloem cells revealed by single cell transcriptomics.The Plant Cell?(2021).

Gene# 20288 Cell# 4257
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 9

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
250300350400450500550Mesophyllu.aBS/XP1/XP2PP2/XP3PP1/PC-XP/PC-PPEpidermisHydathodeCompanionGuard cell
Mesophyllu.aBS/XP1/XP2PP2/XP3PP1/PC-XP/PC-PPEpidermisHydathodeCompanionGuard cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−20−15−10−505−10−50510
Mesophyllu.aBS/XP1/XP2PP2/XP3PP1/PC-XP/PC-PPEpidermisHydathodeCompanionGuard cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−20−15−10−505−10−50510
300350400450500550Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
24681012141618250300350400450500550
Gene expressionWeighted 3' UTR length