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GSM4626003



  Basic Information
Experiment GSM4626003 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 8
Sample Run SRR12046083 SRR12046084 SRR12046085 SRR12046086 SRR12046087 SRR12046088 SRR12046089 SRR12046090
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.

Gene# 23433 Cell# 6306
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
300400500600700AtrichoblastCortexColumellaPhloemTrichoblastEndodermisLateral Root CapXylemQuiescent CenterPericycleProcambium
AtrichoblastCortexColumellaPhloemTrichoblastEndodermisLateral Root CapXylemQuiescent CenterPericycleProcambiumWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−505−10−50510
AtrichoblastCortexColumellaPhloemTrichoblastEndodermisLateral Root CapXylemQuiescent CenterPericycleProcambiumUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−505−10−50510
300400500600700Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
2468101214300400500600700
Gene expressionWeighted 3' UTR length