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GSM4466788



  Basic Information
Experiment GSM4466788 Study GSE121619
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 7
Sample Run SRR11517424 SRR11517426 SRR11517425 SRR11517424 SRR11517425 SRR11517426 SRR11517427
Reference Jean-Baptiste, K., et al. (2019). Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana. The Plant Cell 31(5): 993-1011.

Gene# 20131 Cell# 1076
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 9

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
360380400420440460PhloemQuiescent CenterTrichoblastAtrichoblastCortexColumellaXylemEndodermisProcambium
PhloemQuiescent CenterTrichoblastAtrichoblastCortexColumellaXylemEndodermisProcambiumWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−5051015−10−50510
PhloemQuiescent CenterTrichoblastAtrichoblastCortexColumellaXylemEndodermisProcambiumUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−5051015−10−50510
360380400420440460Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
510152025360380400420440460
Gene expressionWeighted 3' UTR length