HOME/ 3' UTR length/

GSM4363201

  Basic Information
Experiment GSM4363201 Study GSE146034(GSM4363201)
Organism Oryza sativa Japonica (IRGSP-1.0) Tissue Whole root
Protocol 10X Sample# 1
Sample Run SRR11194114
Reference Liu, Q., et al. (2021). Transcriptional landscape of rice roots at the single-cell resolution. Molecular Plant 14(3): 384-394.
Gene# 26237 Cell# 10965
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  Weighted 3' UTR Length
scAPAtrap
Download
Box plot showing weighted 3' UTR length in different cell types
600700800900cortexsteleendodermisepidermis_exodermis_sclerenchymaepidermis_near_root_hairroot_hairroot_cap_of_root_tipmetaxylem
cortexsteleendodermisepidermis_exodermis_sclerenchymaepidermis_near_root_hairroot_hairroot_cap_of_root_tipmetaxylemWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−5051015−15−10−50510
cortexsteleendodermisepidermis_exodermis_sclerenchymaepidermis_near_root_hairroot_hairroot_cap_of_root_tipmetaxylemUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−5051015−15−10−50510
600700800Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
2468101214600700800900
Gene expressionWeighted 3' UTR length

Copyright © 2019-2024 BMI Lab, All Rights Reserved.
Registration Number: 闽ICP备19019942号