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GSM4363200

  Basic Information
Experiment GSM4363200 Study GSE146034(GSM4363200)
Organism Oryza sativa Indica (ASM465v1) Tissue Whole root
Protocol 10X Sample# 1
Sample Run SRR11194113
Reference Liu, Q., et al. (2021). Transcriptional landscape of rice roots at the single-cell resolution. Molecular Plant 14(3): 384-394.
Gene# 20988 Cell# 12322
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  Weighted 3' UTR Length
scAPAtrap
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Box plot showing weighted 3' UTR length in different cell types
350400cortexsteleepidermis_exodermis_sclerenchymaroot_cap_of_root_tipendodermisepidermis_near_root_hairmetaxylemroot_hair
cortexsteleepidermis_exodermis_sclerenchymaroot_cap_of_root_tipendodermisepidermis_near_root_hairmetaxylemroot_hairWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−505−10−50510
cortexsteleepidermis_exodermis_sclerenchymaroot_cap_of_root_tipendodermisepidermis_near_root_hairmetaxylemroot_hairUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−505−10−50510
360380400420Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
12345360380400420440
Gene expressionWeighted 3' UTR length

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