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GSM3490689

  Basic Information
Experiment GSM3490689 Study GSE123013
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 2
Sample Run SRR8257100 SRR8257101
Reference Ryu, K. H., et al. (2019). Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells. Plant Physiology 179(4): 1444-1456.
Gene# 20974 Cell# 4406
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing weighted 3' UTR length in different cell types
340360380400420440PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermis
PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermisWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−50510−20−15−10−5051015
PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermisUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−50510−20−15−10−5051015
360380400420440Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
5101520340360380400420440
Gene expressionWeighted 3' UTR length

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