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GSM3478126



  Basic Information
Experiment GSM3478126 Study GSE122687
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol Drop-seq Sample# 1
Sample Run SRR8206656
Reference Shulse, C. N., et al. (2019). High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports 27(7): 2241-2247.e2244.

Gene# 20585 Cell# 7894
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

  Weighted 3' UTR Length
scAPAtrap
Box plot showing weighted 3' UTR length in different cell types
300400500600PhloemCortexColumellaQuiescent CenterTrichoblastAtrichoblastEndodermisXylemLateral Root CapPericycleProcambium
PhloemCortexColumellaQuiescent CenterTrichoblastAtrichoblastEndodermisXylemLateral Root CapPericycleProcambiumWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−4−20246−6−4−2024
PhloemCortexColumellaQuiescent CenterTrichoblastAtrichoblastEndodermisXylemLateral Root CapPericycleProcambiumUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−4−20246−6−4−2024
300400500600Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
246810121416300400500600
Gene expressionWeighted 3' UTR length