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GSM3178786

  Basic Information
Experiment GSM3178786 Study GSE115469
Organism Homo sapiens (GRCh38) Tissue Liver
Protocol 10X Sample# 1
Sample Run SRR7276478
Reference MacParland, S. A., et al. (2018). Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations. Nat Commun 9(1): 4383.
Gene# 16480 Cell# 1704
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing weighted 3' UTR length in different cell types
50010001500200025003000T cellEndothelial cellHepatocyteKupffer cellDendritic cellMemory B cellErythroblastLiver progenitor cell
T cellEndothelial cellHepatocyteKupffer cellDendritic cellMemory B cellErythroblastLiver progenitor cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−50510−20−15−10−505
T cellEndothelial cellHepatocyteKupffer cellDendritic cellMemory B cellErythroblastLiver progenitor cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−50510−20−15−10−505
10001500200025003000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
02468101250010001500200025003000
Gene expressionWeighted 3' UTR length

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