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GSM3140594



  Basic Information
Experiment GSM3140594 Study GSE114374
Organism Homo sapiens (GRCh38) Tissue Colon
Protocol 10X Sample# 1
Sample Run SRR7159837
Reference Kinchen, J., et al. (2018). Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease. Cell 175(2): 372-386 e317.

Gene# 17460 Cell# 2459
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
10001500200025003000Colonic stem cellIntestinal stem cellColorectal stem cell
Colonic stem cellIntestinal stem cellColorectal stem cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−5051015−15−10−5051015
Colonic stem cellIntestinal stem cellColorectal stem cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−5051015−15−10−5051015
10001500200025003000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
0.511.522.510001500200025003000
Gene expressionWeighted 3' UTR length