HOME/ 3' UTR length/

GSM3040911



  Basic Information
Experiment GSM3040911 Study GSE109774
Organism Mus musculus (mm10) Tissue Mammary
Protocol 10X Sample# 1
Sample Run SRR6835865
Reference Tabula Muris, C., et al. (2018). Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature 562(7727): 367-372.

Gene# 15032 Cell# 2543
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 4

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
10001500Basal cellHormone sensing progenitorProcr+ basal cellLuminal epithelial cells
Basal cellHormone sensing progenitorProcr+ basal cellLuminal epithelial cellsWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−5051015−15−10−50510
Basal cellHormone sensing progenitorProcr+ basal cellLuminal epithelial cellsUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−5051015−15−10−50510
10001200140016001800Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
24681080010001200140016001800
Gene expressionWeighted 3' UTR length