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GSM3040906



  Basic Information
Experiment GSM3040906 Study GSE109774
Organism Mus musculus (mm10) Tissue Lung
Protocol 10X Sample# 1
Sample Run SRR6835860
Reference Tabula Muris, C., et al. (2018). Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature 562(7727): 367-372.

Gene# 13732 Cell# 622
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 6

  Weighted 3' UTR Length
scAPAtrap
Sierra
Box plot showing weighted 3' UTR length in different cell types
100012001400160018002000LipofibroblastMyeloid cellEndothelial cellMatrix fibroblastAxin2+ cellType II pneumocyte
LipofibroblastMyeloid cellEndothelial cellMatrix fibroblastAxin2+ cellType II pneumocyteWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−50510−10−50510
LipofibroblastMyeloid cellEndothelial cellMatrix fibroblastAxin2+ cellType II pneumocyteUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−10−50510−10−50510
10001200140016001800Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
23456100012001400160018002000
Gene expressionWeighted 3' UTR length