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GSM2883205



  Basic Information
Experiment GSM2883205 Study GSE107910
Organism Mus musculus (mm10) Tissue Fetal thymic organ culture
Protocol Drop-seq Sample# 1
Sample Run SRR6365754
Reference Kernfeld, E. M., et al. (2018). A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. Immunity 48(6): 1258-1270.e1256.

Gene# 13824 Cell# 807
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  Weighted 3' UTR Length
scAPAtrap
Box plot showing weighted 3' UTR length in different cell types
100020003000ThymocytesThymus-derived regulatory T (Treg) cell
ThymocytesThymus-derived regulatory T (Treg) cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10010−50510
ThymocytesThymus-derived regulatory T (Treg) cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−5051015−50510
500100015002000250030003500Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
11.522.53500100015002000250030003500
Gene expressionWeighted 3' UTR length