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GSM2438923

  Basic Information
Experiment GSM2438923 Study GSE92865
Organism Mus musculus (mm10) Tissue Small intestine
Protocol 10X Sample# 1
Sample Run SRR5127955
Reference Yan, K. S., et al. (2017). Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem-cell self-renewal. Nature 545(7653): 238-242.
Gene# 13004 Cell# 1412
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  Weighted 3' UTR Length
scAPAtrap
Sierra
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Box plot showing weighted 3' UTR length in different cell types
8001000120014001600180020002200Dendritic cellPaneth cell
Dendritic cellPaneth cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−20−15−10−505−6−4−20246
Dendritic cellPaneth cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−20−15−10−505−6−4−20246
100012001400160018002000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
22.533.548001000120014001600180020002200
Gene expressionWeighted 3' UTR length

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