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GSM2333591

  Basic Information
Experiment GSM2333591 Study GSE87544
Organism Mus musculus (mm10) Tissue Hypothalamus
Protocol Drop-seq Sample# 1
Sample Run SRR4340040
Reference Chen, R., et al. (2017). Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. Cell Reports 18(13): 3227-3241.
Gene# 15436 Cell# 1099
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 7

  Weighted 3' UTR Length
scAPAtrap
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Box plot showing weighted 3' UTR length in different cell types
200040006000OligodendrocytePericyteNeuronQuiescent neural stem cellEndothelial cellNeural stem cellMicroglial cell
OligodendrocytePericyteNeuronQuiescent neural stem cellEndothelial cellNeural stem cellMicroglial cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−5051015−15−10−505101520
OligodendrocytePericyteNeuronQuiescent neural stem cellEndothelial cellNeural stem cellMicroglial cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
−15−10−5051015−15−10−505101520
200030004000500060007000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
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Gene expressionWeighted 3' UTR length

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