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GSM2333581

  Basic Information
Experiment GSM2333581 Study GSE87544
Organism Mus musculus (mm10) Tissue Hypothalamus
Protocol Drop-seq Sample# 1
Sample Run SRR4340025
Reference Chen, R., et al. (2017). Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. Cell Reports 18(13): 3227-3241.
Gene# 16356 Cell# 1107
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 6

  Weighted 3' UTR Length
scAPAtrap
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Box plot showing weighted 3' UTR length in different cell types
100020003000400050006000NeuronOligodendrocyteEndothelial cellQuiescent neural stem cellMural cellMicroglial cell
NeuronOligodendrocyteEndothelial cellQuiescent neural stem cellMural cellMicroglial cellWeighted 3' UTR length
UMAP showing 2D embeddings of celltypes based on the gene expression profile
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NeuronOligodendrocyteEndothelial cellQuiescent neural stem cellMural cellMicroglial cellUMAP_1UMAP_2
UMAP showing distribution weighted 3' UTR length in single cells
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10002000300040005000Weighted 3' UTR lengthUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and weighted 3' UTR length
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Gene expressionWeighted 3' UTR length

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