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data20
Basic Information
Experiment
data20
Study
data20
Organism
Homo sapiens
(GRCh38)
Tissue
PBMC
Protocol
10X
Sample#
1
Sample Run
-
Reference
1k PBMCs from a Healthy Donor - Gene Expression and Cell Surface Protein
Gene#
14266
Cell#
698
PolyA site#
scAPAtrap
7444
Sierra
4420
Gene with polyA site#
scAPAtrap
6707
Sierra
3923
APA event#
scAPAtrap
1387
Sierra
909
Gene with APA event#
scAPAtrap
650
Sierra
413
Cell types
6
T cell: 290
B cell: 83
CD14+CD16+ monocyte: 103
Macrophage: 22
Plasmacytoid dendritic cell: 72
CD14+ Monocytes: 128
APA Usage
Tools
scAPAtrap
Sierra
Download
Box plot showing
in different cell types
UMAP showing 2D embeddings of celltypes based on the gene expression profile
UMAP showing distribution
in single cells
Scatter plot showing correlation between gene expression and