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GSM3490690



  Basic Information
Experiment GSM3490690 Study GSE123013
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 1
Sample Run SRR8257102
Reference Ryu, K. H., et al. (2019). Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells. Plant Physiology 179(4): 1444-1456.

Gene# 19446 Cell# 1473
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  APA Usage
scAPAtrap
Sierra
Box plot showing APA usage in different cell types
0.70.750.80.850.9PhloemAtrichoblastTrichoblastColumellaQuiescent CenterEndodermisCortexXylem
PhloemAtrichoblastTrichoblastColumellaQuiescent CenterEndodermisCortexXylemAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−5051015−10−5051015
PhloemAtrichoblastTrichoblastColumellaQuiescent CenterEndodermisCortexXylemUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
−15−10−5051015−10−5051015
0.750.80.850.9APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage