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GSM3490689

  Basic Information
Experiment GSM3490689 Study GSE123013
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 2
Sample Run SRR8257100 SRR8257101
Reference Ryu, K. H., et al. (2019). Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells. Plant Physiology 179(4): 1444-1456.
Gene# 20974 Cell# 4406
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  APA Usage
scAPAtrap
Sierra
Download
Box plot showing APA usage in different cell types
0.780.80.820.840.860.880.90.92PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermis
PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermisAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
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PhloemCortexTrichoblastQuiescent CenterXylemAtrichoblastColumellaEndodermisUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
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0.80.850.9APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage

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