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GSM3478125



  Basic Information
Experiment GSM3478125 Study GSE122687
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol Drop-seq Sample# 1
Sample Run SRR8206655
Reference Shulse, C. N., et al. (2019). High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports 27(7): 2241-2247.e2244.

Gene# 19907 Cell# 3262
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 11

  APA Usage
scAPAtrap
Box plot showing APA usage in different cell types
0.60.70.80.91TrichoblastCortexEndodermisColumellaQuiescent CenterAtrichoblastPhloemXylemProcambiumLateral Root CapPericycle
TrichoblastCortexEndodermisColumellaQuiescent CenterAtrichoblastPhloemXylemProcambiumLateral Root CapPericycleAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−505−6−4−20246
TrichoblastCortexEndodermisColumellaQuiescent CenterAtrichoblastPhloemXylemProcambiumLateral Root CapPericycleUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
−505−6−4−20246
0.60.70.80.91APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage