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GSM3242730



  Basic Information
Experiment GSM3242730 Study GSE116555
Organism Homo sapiens (hg19) Tissue Endothelial cells
Protocol 10X Sample# 1
Sample Run SRR8540652
Reference Paik, D. T., et al. (2018). Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial Cells. Circ Res 123(4): 443-450.

Gene# 17869 Cell# 2362
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  APA Usage
scAPAtrap
Sierra
Box plot showing APA usage in different cell types
0.450.50.550.60.65Endometrial stem cellTrophoblast cell
Endometrial stem cellTrophoblast cellAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−50510−15−10−505
Endometrial stem cellTrophoblast cellUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
−15−10−50510−15−10−505
0.450.50.550.60.65APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage