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GSM3094423



  Basic Information
Experiment GSM3094423 Study GSE113043
Organism Mus musculus (mm10) Tissue Colon
Protocol 10X Sample# 1
Sample Run SRR7001027
Reference Degirmenci, B., et al. (2018). GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells. Nature 558(7710): 449-453.

Gene# 15181 Cell# 4464
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 2

  APA Usage
scAPAtrap
Sierra
Box plot showing APA usage in different cell types
0.40.50.60.7Colonic stem cellIntestinal stem cell
Colonic stem cellIntestinal stem cellAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−5051015−505
Colonic stem cellIntestinal stem cellUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
Scatter plot showing correlation between gene expression and APA usage