Experiment	GSM2883204	Study	GSE107910 
Organism	Mus musculus (mm10)	Tissue	Thymus
Protocol	Drop-seq	Sample#	1
Sample Run	SRR6365753
Reference	Kernfeld, E. M., et al. (2018). A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. Immunity 48(6): 1258-1270.e1256.

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Gene#	13089	Cell#	990
PolyA site#	scAPAtrap 9993Sierra -	Gene with polyA site#	scAPAtrap 8269Sierra -
APA event#	scAPAtrap 3054Sierra -	Gene with APA event#	scAPAtrap 1330Sierra -
Cell types 2	Thymocytes: 775Thymus-derived regulatory T (Treg) cell: 215

Tools

scAPAtrap

scAPAtrap

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Box plot showing APA usage in different cell types

UMAP showing 2D embeddings of celltypes based on the gene expression profile

UMAP showing distribution APA usage in single cells

Scatter plot showing correlation between gene expression and APA usage