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GSM2883186



  Basic Information
Experiment GSM2883186 Study GSE107910
Organism Mus musculus (mm10) Tissue Thymus
Protocol Drop-seq Sample# 1
Sample Run SRR6365735
Reference Kernfeld, E. M., et al. (2018). A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. Immunity 48(6): 1258-1270.e1256.

Gene# 14073 Cell# 829
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  APA Usage
scAPAtrap
Box plot showing APA usage in different cell types
0.40.50.60.7Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cell
Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cellAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−50510−20−10010
Naive thymic NKT17 cellThymocytesThymus-derived regulatory T (Treg) cellUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
Scatter plot showing correlation between gene expression and APA usage