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GSM2723629



  Basic Information
Experiment GSM2723629 Study GSE102086
Organism Mus musculus (mm10) Tissue Embryonic skin
Protocol 10X Sample# 1
Sample Run SRR5884522
Reference Fan, X., et al. (2018). Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin. Developmental Cell 47(1): 21-37.e25.

Gene# 20628 Cell# 1049
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 6

  APA Usage
scAPAtrap
Sierra
Box plot showing APA usage in different cell types
0.40.50.60.70.80.9FibroblastsUnknownMast cellsMacrophagesEndothelial cellsPericytes
FibroblastsUnknownMast cellsMacrophagesEndothelial cellsPericytesAPA Usage
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−20−15−10−50510−50510
FibroblastsUnknownMast cellsMacrophagesEndothelial cellsPericytesUMAP_1UMAP_2
UMAP showing distribution APA usage in single cells
−20−15−10−50510−50510
0.40.50.60.70.80.9APA UsageUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and APA usage