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GSM4625997

  Basic Information
Experiment GSM4625997 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 3
Sample Run SRR12046057 SRR12046058 SRR12046059 SRR12046060
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.
Gene# 24309 Cell# 11236
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  PolyA Site Expression
scAPAtrap
Sierra
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Box plot showing poly(A) site expression in different cell types
51015TrichoblastCortexColumellaAtrichoblastPhloemXylemQuiescent CenterEndodermis
TrichoblastCortexColumellaAtrichoblastPhloemXylemQuiescent CenterEndodermisPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−50510−15−10−5051015
TrichoblastCortexColumellaAtrichoblastPhloemXylemQuiescent CenterEndodermisUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−15−10−50510−15−10−5051015
51015Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
51015024681012141618
Gene expressionPoly(A) site expression

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