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GSM4625995

  Basic Information
Experiment GSM4625995 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 2
Sample Run SRR12046053 SRR12046054
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.
Gene# 23780 Cell# 10038
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  PolyA Site Expression
scAPAtrap
Sierra
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Box plot showing poly(A) site expression in different cell types
246810PhloemEndodermisTrichoblastQuiescent CenterAtrichoblastColumellaXylemCortex
PhloemEndodermisTrichoblastQuiescent CenterAtrichoblastColumellaXylemCortexPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−50510−15−10−5051015
PhloemEndodermisTrichoblastQuiescent CenterAtrichoblastColumellaXylemCortexUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−50510−15−10−5051015
246810Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression

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