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GSM4625994



  Basic Information
Experiment GSM4625994 Study GSE152766
Organism Arabidopsis thaliana (TAIR10) Tissue Whole root
Protocol 10X Sample# 2
Sample Run SRR12046051 SRR12046052
Reference Denyer, T., et al. (2019). Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. Developmental Cell 48(6): 840-852.e845.

Gene# 23088 Cell# 3926
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  PolyA Site Expression
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
51015Quiescent CenterTrichoblastAtrichoblastPhloemCortexColumellaXylemEndodermis
Quiescent CenterTrichoblastAtrichoblastPhloemCortexColumellaXylemEndodermisPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−15−10−5051015−15−10−50510
Quiescent CenterTrichoblastAtrichoblastPhloemCortexColumellaXylemEndodermisUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−15−10−5051015−15−10−50510
51015Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
246810121416246810121416
Gene expressionPoly(A) site expression