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GSM3040900



  Basic Information
Experiment GSM3040900 Study GSE109774
Organism Mus musculus (mm10) Tissue Marrow
Protocol 10X Sample# 1
Sample Run SRR6835854
Reference Tabula Muris, C., et al. (2018). Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature 562(7727): 367-372.

Gene# 13402 Cell# 1975
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 3

  PolyA Site Expression
scAPAtrap
Sierra
Box plot showing poly(A) site expression in different cell types
510Conventional dendritic cellPre-haematopoietic stem cellBlastema cell
Conventional dendritic cellPre-haematopoietic stem cellBlastema cellPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−50510−10−5051015
Conventional dendritic cellPre-haematopoietic stem cellBlastema cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−50510−10−5051015
24681012Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression